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Microbial Genomics Workshop
Course summary
Get hands-on practical experience on next-generation sequencing (NGS) and its applications in clinical microbiology during this one-day workshop in London at the University of Westminster. Learn step-by-step how to easily and effectively analyze and manage NGS data generated by modern sequencing technologies.
The course is aimed at those with an interest in the applications of next-generation sequencing technologies in diagnostic microbiology.
Course structure
- Introduction to NGS and their applications in clinical microbiology (lecture)
- Working with NGS data: Raw sequence data and quality control (computer lab)
- Outbreak investigation using NGS (lecture)
- De novo assembly: From raw reads to whole genome (lecture & computer lab)
- From assembled genomes to detection of antibiotic resistance in bacteria, monitoring resistance in HIV and HBV, detection of virulence genes, detection of mobile genetic elements (MGEs) such as plasmids, bacteriophages.
Learning outcomes
By the end of the course, delegates will be able to:
- Understand NGS and its applications in clinical microbiology
- Understanding NGS data: Reading raw sequence data and quality control
- Interpret outbreak investigation using NGS
- Identify microbial resistance
Our Tutors
Dr Manal Mohammed holds PhD in Medical Microbiology from the University of Liverpool, UK. Manal's research interests include application of next-generation sequencing technologies and associated bioinformatics analysis tools in investigating the molecular basis of virulence of non-typhoidal salmonellosis in humans and understanding the complex dynamics of bacteria-phage interaction.
Dr Manal Mohammed is also a fellow at the Higher Education Academy. She teaches Microbiology, Medical Microbiology and Microbial Genomics across a wide range of undergraduate and postgraduate modules.
Location
This course is taught both online and on Campus at our Cavendish Campus in central London, within easy walking distance of Oxford Street and Tottenham Court Road.
Accessibility
Together with AccessAble, we have created online Disabled Access Guides for our buildings.
Related Courses
- Blood Sciences
- IBMS Registration Portfolio Workshop
- Train the Trainer for Biomedical Scientists
مخطط البرنامج
Degree Overview:
- Overview: This one-day workshop provides hands-on practical experience on next-generation sequencing (NGS) and its applications in clinical microbiology. It covers how to analyze and manage NGS data generated by modern sequencing technologies.
- Objectives: By the end of the course, delegates will be able to:
- Understand NGS and its applications in clinical microbiology
- Understand NGS data: Reading raw sequence data and quality control
- Interpret outbreak investigation using NGS
- Identify microbial resistance
Outline:
- Course Structure:
- Introduction to NGS and their applications in clinical microbiology (lecture)
- Working with NGS data: Raw sequence data and quality control (computer lab)
- Outbreak investigation using NGS (lecture)
- De novo assembly: From raw reads to whole genome (lecture & computer lab)
- From assembled genomes to detection of antibiotic resistance in bacteria, monitoring resistance in HIV and HBV, detection of virulence genes, detection of mobile genetic elements (MGEs) such as plasmids, bacteriophages.
Teaching:
- Faculty: Dr Manal Mohammed, PhD in Medical Microbiology from the University of Liverpool, UK. Her research interests include applying next-generation sequencing technologies and associated bioinformatics analysis tools in investigating the molecular basis of virulence of non-typhoidal salmonellosis in humans and understanding the complex dynamics of bacteria-phage interaction. She is also a fellow at the Higher Education Academy and teaches Microbiology, Medical Microbiology, and Microbial Genomics across a wide range of undergraduate and postgraduate modules.
- Accessibility: The University of Westminster has created online Disabled Access Guides for its buildings in collaboration with AccessAble.
University of Westminster
Overview:
University of Westminster is a public university located in London, England. It offers a wide range of undergraduate and postgraduate programs across various disciplines. The university is known for its focus on practical learning and its strong connections to the industry.
Services Offered:
Student Life and Campus Experience:
The university has four campuses across London, providing students with a vibrant and diverse campus experience. Students have access to various facilities, including a cinema, gallery spaces, and sports facilities. The university also offers a range of student support services, including career guidance, academic support, and mental health services.
Key Reasons to Study There:
Location:
The university's location in London provides students with access to a wealth of cultural and professional opportunities.Practical Learning:
The university emphasizes practical learning, with many programs incorporating work placements and industry projects.Industry Connections:
The university has strong connections to industry, providing students with opportunities for networking and career development.Diverse Student Body:
The university has a diverse student body, creating a welcoming and inclusive environment.Academic Programs:
The university offers a wide range of academic programs, including:
Undergraduate courses:
A broad range of undergraduate courses in various disciplines, including business, design, creative industries, and liberal arts.Postgraduate courses:
A variety of postgraduate study options, including master's degrees, research degrees, and short courses.Other:
The university has a strong commitment to research and innovation, with a focus on areas such as sustainability, social justice, and digital technologies. It also has a dedicated alumni network, providing support and opportunities for graduates.
